Table S3. Consensus sequence of the 1866-bp HOR (11mer) in chromosome 1

m01 (168 bp)

TTGAATGCAA GCATCACGAA GAAGGTTCTG AGAATGCTTC TGTTTACGTA GGTGACTTTT CTCCCGTATC CAACGAAATC CTCAGAGCGG TCCAAATCTC CACTTGCAGA TTCTACACAA AGTGTGTTTG GAAACTGCTC CACCCAAAGG AATGTTCAGC TCTGTGAG

m02 (171 bp)

TTGAACTCAA TCGTCACAAA GCGTTTCCTG GGAATGCTCC TGTCTCGCTT TTATGTGCAG TTATATCCTC TACTGCCATA GGCCTCAAAG CGGTCCAAAT CTCCCCTTTC AGATTCTACC AAAAGTGTGT TTCCAAACGG CCCCATCAAA GGGGATGTTC AACTCGGTGA C

m03 (171 bp)

TTGAATGCAA TCATCACAAA GCAGCTTCTG AGAATGCTTC CATGTAGCTT TGATGAGAAG ATATTTCCTT TTCCACCCCA GGCCTCGAAG CCCTCCAAAT GTCCCCTTGC AGATGCTAGA AAGAGGGGGT TTCAAAGCTG CTCTATCAAA AGGAAAGTAC AACTCTGTGA G

m04 (171 bp)

TTGAATGCAA ACATCACAAG GAAGTTCCTG AGCATGCTTC CGTTTAGCTT TTACGGGAAG ATTATCCCTT TTCCATCGAA ATGTTCAAAG AGGTCCACAT ATCCGCTTGC AGATTCCACC GAAAGAGTGT TTCCAAACTG CTGCATCAAA AGGAATCCTC AGCTCCGTGA G

m05 (171 bp)

TTGAATGCAA TCATCACCAA GAAGTTTCTG ACAATGCTTC TCTCTAGTTT TTATGTGAAG ATATTTCCTT TTCCACCGCA GGCCTGAAAG CGCTCCAAAT GTCCACTTGG AGGCTCTACG AAAAGAATGT TTCAAAACTG CTCTATGAAA AGCAATGTTA TACTCTGGGA G

m06 (171 bp)

TTGAACACAA GCCTCACAAA GGAGTTTCTG AGAATGCTTC TGTTTACTTT TTACGTGAGG ATATTCCCGT TTCCAAAGAA GTCTTCACAG AGTTCCACCT ATCCATTTGC AGATGCTAGC AAAAGAGAGT TTCAAAACTG CTCCATCAAA AGGAATGTTC AACTCTGTGA G

m07 (170 bp)

TTGCATGCAA TCATCACAGA GAAGTTTCTG AGAAGGCTTC TGTCTAGATT TTATGTGAAG ATATAGCCGT TTCGAACGAA GGCCACAAAG TGCTCCAAAT ATCCACTTGC AGGTCCTCCA AAAAGAGTGT TTCAAACGTG AACTACCAAA GGAAGGCTCA ACTCTGGACT

m08 (167 bp)

TTGAATGCCA ACGTCAGAAG GATGTTTCTG CGAAAGCTTC TGTTTAGTTA GGTGACGTTA TCCCGTTTCC AACGAAATCC TCAGAGAGGT CCAAATATCC ACCTGCAGAG TCTACAAAAA GTGTGTTTCA AAACTGCTCC ACCCAAAGGA ATGTTCAGCT CTGTGAG

m09 (169 bp)

TTGAACTCAA TCATCCCAAA GTATTTTCTG AGAATGCTTC TGTCCAGTTT TTACATGAAG CTGTTTCCTT TACTACCGTA GGCCTCAAAG CGTTCCAAAC CTCCACTTGC AGATACTACG AAAAGAGCGT TTCAACCTGA ACTCACAAGG GAAGGTTCAA CTCTGTCAG

m10 (167 bp)

TTGAATGCCA ACATCACCAA GAAGTTCTGA GAATGTTCCT CTTCAGTTAT GTGAGGTTTA TCCCGTTTCC AACGAAATTC TCAGAGAAGT CCCAAAATCC ACTTGCATAT TCCACAAAAG GTGTGTTTGG AAAATGCGCC ATCAAAAGAT ATGCTCAGCT CTGTGAG

m11 (170 bp)

TTAAACTCAA TCATCGCAAA GAATTTTCTG AGAATGCTTC CGTCTTGTTT TTAGATGAAG TTCTTTCCTT TACTACGATA GGCCTCAAAG AGGTCCAAAT CTCCACTTGC AGATTCTGCA GAAGGAGTGT TTCAAACCTG AACTGTCAGA GAAAGGTTCA ACACTGTGAG

Eleven monomer variants in consensus HOR are denoted m01, m02, ..., m11. Consensus was determined taking into account all copies of 1866-bp HOR (direct and reverse complement) identified in GenBank data for chromosome 1 (Tables 1 and S1).